Patrick Center Peer-Review Publications
Download Publication list (1933 to Present) [.pdf, 147KB]
2008
Flinders, C.A., R.J. Horwitz, & T. Belton. 2008. Relationship of fish and macroinvertebrate communities in the mid-Atlantic uplands: implications for integrated assessments. Ecological Indicators (in press).
Fonseca D.M., Smith J.L., Kim H-C., & Mogi M. 2008. Population genetics of the mosquito Culex pipiens pallens reveals sex-linked asymmetric introgression by Culex quinquefasciatus. American Journal of Tropical Medicine and Hygiene (in press)
2007
Araújo, A. & McNair, J.N. 2007. Individual- and population-level effects of antimicrobials on the rotifers, Brachionus calyciflorus and B. plicatilis. Hydrobiologia 593: 185–199.
Ashley, J.T.F., D. Libero, E. Halscheid, L. Zaoudeh, & H. M. Stapleton. 2007. Polybrominated Diphenyl Ethers in American Eels (Anguilla rostrata) from the Delaware River, USA. Bulletin of Environmental Contamination and Toxicology 79: 99-103.
Flinders, C.A. & D.D. Magoulick. 2007. The role of predation risk and foraging profitability in habitat selection of a lotic crayfish: effect of depth and crayfish size. Journal of the North American Benthological Society 26: 767-778.
Flinders, C.A. & D.D. Magoulick. 2007. Habitat selection and the importance of environmental variables in lotic crayfish assemblages. Journal of Crustacean Biology 27: 242-254.
Fonseca D.M., Smith J.L., Kim H-C. & Mogi M. 2007. Population genetics of the mosquito Culex pipiens pallens reveals sex-linked asymmetric introgression by Culex quinquefasciatus American Journal of Tropical Medicine and Hygiene (in press)
Johnson, T.E., McNair, J.N., Srivastava, P., & Hart, D.D. 2007. Stream ecosystem responses to spatially variable landcover: a model for developing riparian restoration strategies. Freshwater Biology 52: 680-695.
Morales, E.A. & Trainor, F.R. 2007. The role of phenotypic plasticity in the interpretation of ecological data. In: Feyen, J., Aguirre, L. F. & Moraes, R. M. (Eds.). Congreso internacional sobre desarrollo y medio ambiente y recursos naturales: sostenibilidad a múltiples niveles y escalas/Internacional congress on development, environment and natural resources: Multi-level and multi-scale sustainability. Vol. II. pp. 1150-1157. Universidad Mayor de San Simón. Talleres Gráficos Kipus. Cochabamba, Bolivia.
Morales, E.A. & Vis, M. 2007. Epilithic diatoms (Bacillariophyceae) from cloud forest and alpine streams in Bolivia, South America. Proceedings of the Academy of Natural Sciences of Philadelphia 126: 123-155.
O’Connor, M.P., Agosta, S.J., Hansen , F., Kemp, S.J., Sieg, A.E., McNair, J.N. & Dunham, A.E. 2007. Phylogeny, regression, and the allometry of physiological traits. American Naturalist 170: 431–442.
O’Connor, M.P., Agosta, S.J., Hansen, F., Kemp, S.J., Sieg, A.E., Wallace, B.P., McNair, J.N. & Dunham, A.E. 2007. Size, selection, and physiology: Reconsidering the mechanistic basis of the metabolic theory of ecology. Oikos 116: 1058–1072.
Patrick, R., J. Palms, D. Kreeger, and C.Harris. 2007. 25 years of radionuclides in the Susquehanna River via periphyton biomonitors. Health Physics Journal. 92(1):1-9.
Palms J., R. Patrick, D. Kreeger, and C.Harris. 2007. Terrestrial and aquatic biomonitors: 25 years of radionuclides detection.Health Physics Journal 92(3): 219-225.
Ponader K.C., D.F. Charles & TJ Belton. 2007. Diatom-based TP and TN inference models and indices for monitoring nutrient enrichment of New Jersey streams. Ecological Indicators 7:79-93.
Potapova M & D.F. Charles. 2007. Diatom metrics for monitoring eutrophication in rivers of the United States. Ecological Indicators 7: 48-70.
Ponader, K.C. & M.G. Potapova. 2007. Diatoms from the genus Achnanthidium in flowing waters of the Appalachian Mountains (North America): Ecology, distribution and taxonomic notes. Limnologica 37: 227-241.
Potapova, M. & P.B. Hamilton. 2007. Morphological and ecological variation within the Achnanthidium minutissimum (Bacillariophyceae) species complex. Journal of Phycology 43:561-575.
Siver, P.A., Hamilton, P.B. & Morales, E.A. 2007. Notes on the genus Nupela (Bacillariophyceae) including the description of a new species, Nupela scissura sp. nov. and an expanded description of Nupela paludigena. Phycological Research 55: 125-134.
Weis, P. and J.T.F. Ashley. 2007. Contaminants in Fish of the Hackensack Meadowlands, New Jersey: Size, Sex, and Seasonal Relationships as Related to Health Risks. Arch. Environ. Contam. Toxicol. 52: 80-89.
2006
Ashley J.T., K.L. Bushaw-Newton, M. Wilhelm, A. Boettner, G. Drames & D.J. Velinsky. The effects of small dam removal on the distribution of sedimentary contaminants. Environmental Management and Assessment 114(1-30): 287-312.
Bahnck, C.M. and D.M. Fonseca. 2006. Rapid assay to identify the two genetic forms of Culex (Culex) pipens L. (Dipera: Culicidae) and hybrid populations. American Journal of Tropical Medicine and Hygiene 75: 251-255.
Bernhardt E., S.E. Bunn, D.D. Hart, B. Malmqvist, T. Muotka, R.J. Naiman, C. Pringle, M. Reuss & B. van Wilgen 2006. Perspective: The challenge of ecologically sustainable water management. Water Policy 8(5): 475-479.
Beadell J.S., Ishtiaq F., Covas R., Melo M., Warren B.H., Atkinson C.T., Bensch S., Graves G.R., Jhala Y.V., Peirce M.A., Rahmani A.R., Fonseca D.M. & R.C. Fleischer. 2006. Global Phylogeography of Hawaii’s Avian Malaria. Proceedings of the Royal Society of London. 273(1604):2935-44.
Cardinale B.J., H. Hillebrand & D.F. Charles. 2006. Geographic patterns of diversity in streams predicted by a multivariate model of disturbance and productivity. Journal of Ecology 94(3): 609-618.
Charles, D.F., R.J. Stevenson, M. Kelly, and L. Ector. 2006. Workshop report. Diatoms and environmental assessment. In A. Witkowski (ed.), Proceedings of the 18th International Diatom Symposium. Miedzyzdroje, Poland, 2004. A. Witkowski, editor. Biopress Limited, Bristol.
Charles DF, FW Acker, DD Hart, CW Reimer & PB Cotter. 2006. Large-scale regional variation in diatom-water chemistry relationships: Rivers of eastern USA. Hydrobiologia 561(1): 27-57.
Church TM, C Sommerfield, DJ Velinsky, D Point, C Benoit, D Amouroux, D Plaa & O Donard. Marsh sediments as records of sedimentation, eutrophication and metal pollution in the urban Delaware Estuary. Marine Chemistry 102(1-2): 72-95.
Edlund, M. B, Morales, E. A. & Spaulding, S. A. 2006. The type and taxonomy of Fragilaria elliptica Schumann, a widely misconstrued taxon. In Witkowski, A. (Ed.). Proceedings of the 18th International Diatom Symposium, Poland. pp 53-59. Biopress Limited, Bristol, England.
Fairchild, G.W. and D.J. Velinsky. 2006. Effects of small ponds on headwater stream water chemistry. Lake and Reservoir Management. 22 (4): 321-212.
Fingerut, J.T., Hart, D.D. and McNair, J.N. 2006. Silk use enhances benthic invertebrate settlement. Oecologia 150: 202–212.
Fonseca DM, JL Smith, RC Wilkerson & RC Fleischer. 2006. Pathways of expansion and multiple introductions illustrated by large genetic differenatiation among worldwide populations of southern house mosquito. American Journal of Tropical Medicine and Hygiene 74: 284-289.
Keyghobadi N, LaPointe D, Fleischer RC & DM Fonseca 2006. Fine-scale population genetic structure of a wildlife disease vector: the southern house mosquito on the island of Hawaii. Molecular Ecology 15: 3919-3930.
Keyghobadi N, Unger KP, Weintraub JD & DM Fonseca. 2006. Remnant populations of the regal fritillary (Speyeria idalia) in Pennsylvania: local genetic structure in a high gene flow species. Conservation Genetics 7: 309-313.
Lowe, R. L., Morales, E. A. & Kilroy, C. 2006. Frankophila biggsii (Bacillariophyceae), a new diatom species from New Zealand. New Zealand Journal of Botany 44:41-46.
McNair, J.N. 2006. Probabilistic settling in the Local Exchange Model of turbulent particle transport. Journal of Theoretical Biology 241: 420–437.
Morales, E. A. 2006. Staurosira incerta (Bacillariophyceae) a new fragilarioid taxon from freshwater systems in the United States with comments on the structure of girdle bands in Staurosira Ehrenberg and Staurosirella Williams et Round. In Manoylov, K. & Ognjanova, N. (Eds.). Fossil and Recent Phycological Studies. Dobrina Temniskova-Topalova. Festschrift. pp. 133-145. Pensoft Publishers ad University Publishing House. Sophia, Bulgaria.
Morales, E. A. 2006. Small Planothidium Round et Bukhtiyarova (Bacillariophyceae) taxa related to P. daui (Foged) Lange-Bertalot from the United States. Diatom Research 21: 325-342.
Morales, E. A. & Manoylova, K. M. 2006. Morphological studies on selected taxa in the genus Staurosirella Williams et Round (Bacillariophyceae) from rivers in North America. Diatom Research 21: 343-364.
Potapova, M. 2006. Achnanthidium zhakovschikovii sp. nov. (Bacillariophyta) and related species from rivers of Northewstern Russia. Nova Hedwigia, 82(3-4):399-408.
Potapova, M. G. and Winter D. 2006. Use of nonparametric multiplicative regression for modeling diatom habitat: a case study of three Geissleria species from North America. Pages 319-332 In Ognjanova-Rumenova, N. and K. Manoylov (eds.) Advances in Phycological Studies. Festschrift in Honour of Prof. Dobrina Temniskova-Topalova. Pensoft Publishers & University Publishing House, Sofia-Moscow.
Siver, P. A., Morales E. A., van de Vijver, B, Smits, M., Hamilton, P. B., Lange-Bertalot, H. & Hains, J. J. 2006. Observations on Fragilaria longifusiformis comb. nov. et nom. nov. (Bacillariophyceae), a widespread planktic diatom described from North America and Europe. Phycological Research 54: 183-192.
Sprouffske, K., D.F. Charles, E.A. Morales, M. Potapova, K.C. Ponader, D.M. Winter, C. Bell, P. Cotter, R. McCourt, D. Mellott, C. Ratnayaka, and D. Waterman. 2006. Academy of Natural Sciences online algae image resources. In A. Witkowski (ed.), Proceedings of the 18th International Diatom Symposium. Miedzyzdroje, Poland, 2004. A. Witkowski, editor. Biopress Limited, Bristol.
Srivastava P, JN McNair & TE Johnson 2006. Comparison of process-based and artificial neural network approaches for streamflow modeling in an agricultural watershed. Journal of the American Water Resources Association 42(3): 545-563.
Velinsky DJ, KL Bushaw-Newton, TE Johnson & DA Kreeger 2006. Effects of a dam removal in SE Pennsylvania on stream chemistry. Journal of the North American Benthological Society 25(3): 569-582.
2005
Bednarek AT & DD Hart 2005. Modifying dam operations to restore rivers: Ecological
responses to dam mitigation in the Tennessee River. Ecological Applications 15: 997-1008.
Bernhardt ES, MA Palmer, JD Allan, G Alexander, K Barnas, S Brooks, J Carr, C
Dahm, J. Follstad-Shah, D Galat, S Gloss, P Goodwin, DD Hart, B Hassett, R Jenkinson, S Katz, GM Kondolf, PS Lake, R Lave, JL Meyer, TK O'Donnell, L Pagano, B Powell & E Sudduth. 2005. Synthesizing U.S. river restoration efforts. Science 308: 636-637.
Brown, J., J. Perillo, T. Kwak and R.J. Horwitz. 2005. Implications of Pylodictis olivaris (flathead catfish) introduction into the Delaware and Susquehanna Drainages. Northeastern Naturalist 12(4): 473-484.
Bushaw-Newton KL, JT Ashley & DJ Velinsky 2005. A Process for Assessing the Ecological Effects of a Proposed Dam Removal. Hydroreview 24: 36-44.
Fairchild GW, JN Anderson & DJ Velinsky 2005. The trophic state "chain of relationships" in ponds: does size matter? Hydrobiologica 539: 35-46.
Hassett B, M Palmer, E Bernhardt, S Smith, J Carr & DD Hart 2005. Restoring watersheds project by project: Trends in Chesapeake Bay tributary restoration. Frontiers in Ecology and the Environment 3: 259-267.
Li C, RC Wilkerson & DM Fonseca 2005. Isolation of polymorphic microsatellite markers from the malaria vector Anopheles marajoara (Diptera: Culicidae). Molecular Ecology Notes 5: 65-67.
Morales EA & M Le 2005. The taxonomy of the diatom Lacunicula sardiniensis Lange-Bertalot, Cavacini, Tagliaventi et Alfinito and its relationship with the genus Craticula Grunow (Bacillariophyceae). Proceedings of the Academy of Natural Sciences of Philadelphia 154:155-161.
Morales EA & M Le 2005. A new species of the diatom genus Adlafia (Bacillariophyceae) from the United States. Proceedings of the Academy of Natural Sciences of Philadelphia 154:149-154.
Morales EA 2005. Observations of the morphology of selected fragilarioid diatoms
(Bacillariophyceae) common in ecological studies from the United States. Phycological
Research 53(4): 225-239.
Morales EA, LL Bahls & WR Cody 2005. Morphological studies of Distrionella
Incognita (Reichardt) Williams (Bacillariophyceae) from North America with comments on thetaxonomy of Distrionella Williams. Diatom Research 20(1): 115-135.
Novák M, MA Vile, SH Bottrell, M Stepanova, I Jackova, F Buzek, E Prechova, & R
Newton. 2005. Isotope systematics of sulfate-oxygen and sulfate-sulfur in six European
Peatlands. Biogeochemistry 76: 187-213.
Palmer MA, ES Bernhardt, JD Allen, PS Lake, G Alexander, S Brooks, J Carr, S
Clayton, CN Dahm, J Follstad Shah, DL Galat, S Gloss, P Goodwin, DD Hart, B Hassett, R Jenkinson, KM Kondolf, R Lave, JL Meyer, TK O'Donnell, L Pagano & E Sudduth 2005. Standards for ecologically successful river restoration. Journal of Applied Ecology 42:208-217.
Potapova MG & DF Charles 2005. Choice of substrate in algae-based water quality assessment. Journal of the North American Benthological Society 24: 415-427.
Smith JL, N Keyghobadi, MA Matrone, RL Escher & DM Fonseca 2005. Cross-species comparison of microsatellite loci in the Culex pipiens complex and beyond. Molecular Ecology Notes 5: 697-700.
Thomson JR, DD Hart, DF Charles, TL Nightengale & DM Winter 2005. Effects of removal of a small dam on downstream macroinvertebrate and algal assemblages in a Pennsylvania stream. Journal of the North American Benthological Society 24: 192-207.
Widdel AK, LJ Mccuiston, WJ Crans, LD Kramer & DM Fonseca 2005. Finding needles in the haystack: single copy microsatellite loci for Aedes japonicus (Diptera: Culicidae). American Journal of Tropical Medicine and Hygiene 73:744-748.
2004
Bram MR & JN McNair 2004. Seed germinability and its seasonal onset in three populations of Japanese knotweed. Weed Science 52: 759-767.
Fonseca DM, N Keyghobadi, C Malcolm, C Mehmet, M Mogi, F Schaffner, RC Fleischer & RC Wilkerson 2004. Emerging vectors in the Culex pipiens complex. Science 303:1535-1538.
Fonseca DM, N Keyghobadi, C Malcolm, M Mogi, F Schaffner, RC Fleischer & RC Wilkerson 2004. Response to Outbreak of West Nile virus in North America. Science 306: 1473-1475.
Gauci, V, E Matthews, N Dise, B Walter, D Koch, G Granberg & MA Vile 2004. Sulfur pollution suppression of the wetland methane source in the 20th and 21st Centuries. Proceedings of the National Academy of Sciences 101: 12583-12587.
Keyghobad N, MA Matrone, GD Ebel, LD Kramer & DM Fonseca 2004. Microsatellite loci from the northern house mosquito (Culex pipiens), a principal vector of West Nile virus in North America. Molecular Ecology Notes 4: 20-22.
Novák M & MA Vile 2004. Controls on d18O and d34S of peat pore water. Geochimica et Cosmochimica Acta 68: A399-A399 Suppl. S.
Potapova MG, DF Charles, KC Ponader & DM Winter 2004. Quantifying species indicator values for trophic diatom indices: a comparison of approaches. Hydrobiologia 517:25-41.
Potapova MG & KC Ponader 2004. Two common North American diatoms,
Achnanthidium rivulare sp. nov. and A. deflexum (Reimer) Kingston: Morphology, ecology and comparison with related species. Diatom Research 19: 33-57.
Smith JL & DM Fonseca 2004. Rapid assays for identification of members of the Culex (Culex) pipiens complex, their hybrids, and other sibling species (Diptera: Culicidae) American Journal of Tropical Medicine and Hygiene 70: 339-345.
Sweeney BW, TL Bott, JK Jackson, LA Kaplan, JD Newbold, LJ Standley, WC Hession & RJ Horwitz. 2004. Riparian deforestation, stream narrowing, and loss of stream ecosystem services. Proceedings of the National Academy of Sciences 101: 14132-14137.
Thomson JR, BD Clark, JT Fingerut & DD Hart 2004. Local modification of benthic flow environments by suspension-feeding stream insects. Oecologia 140: 533-542